Workshop and Lecture Archive
Quick Email Contacts
2021 Workshop/Lectures
- 2021 September 21, SSRL/LCLS Users' Meeting: CryoEM of Macromolecules and Cells Workshop
- S2C2 CryoEM Map Modeling and Validation Workshop
- S2C2 CryoEM Specimen Preparation and Data Collection Workshop
2020 Workshop/Lectures
- CryoEM In-Residence Training and Public Lecture: Tomography and Volta Phase Plate
- S2C2 CryoEM CCP-EM Modeling Workshop
- SSRL/LCLS Users' Meeting: CryoEM of COVID-related Macromolecules
- Fundamentals of Single Particle CryoEM Workshop
- S2C2 CryoEM Image Processing Workshop: cryoSPARC
- Basics of Sample Preparations & Detection Technologies for Cryo-Electron Microscopy
- General Principles of Phase Contrast and Phase Plates & Single-Particle Grid Preparation
- Specimen Prep and Data Collection Workshop (March 2020 cancelled due to COVID)
- S2C2 CryoEM Modeling Workshop: ChimeraX & Phenix
2019 Workshop/Lectures
- S2C2 CryoEM Image Processing Workshop: SCIPION
- S2C2 CryoEM Training for Beginners Workshop
- S2C2 CryoEM Modeling Workshop: ChimeraX & Phenix
- S2C2 CryoEM Image Processing Workshop
- S2C2 CryoEM Training for Beginners Workshop
2022
SSRL/LCLS Users' Meeting - CryoEM Workshop
Virtual Workshop | September 26, 2022 | Agenda
Workshop Presentations (not including River Xiao) (no PDFs of talks)
|
Speaker
|
Institution
|
Title
|
|---|---|---|
|
Monday, September 26, 2022
|
||
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Peter Peters
|
Maastricht University
|
Sample preparation for Single Particle Analysis and cryo-EM tomography
|
|
Chu-Young Kim
|
Yale University
|
Detection and repair of noncovalent DNA modifications
|
|
Chencheng Fan
|
Caltech
|
Neutralizing monoclonal antibodies elicited by mosaic RBD nanoparticles bind conserved sarbecovirus epitope
|
|
Melani Ohi
|
University of Michigan
|
Structure and functional analysis of pathogenic T4SS using cryo-EM
|
|
River Xiao
|
University of Texas
|
Structural Studies of giant icosahedral eukaryotic dsDNA viruses
|
|
David Chmielewski
|
|
Chikungunya virus assembly and budding visualized in situ using cryoET
|
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S2C2 High Resolution CryoET Image Processing Virtual Workshop
Virtual Workshop | March 1 - 3, 2022 | Agenda
Workshop Materials: D. DeRosier's Fourier Transform Treastise Booklet, T. Goddard's Materials: Zip Folder, S. Ludtke's Tutorial: Zip Folder
| Speaker | Institution | Title | Slide Deck | Recording |
|---|---|---|---|---|
| Tuesday, March 1, 2022 | ||||
| David DeRosier | Brandeis University | EM Images:what you want vs what you get and why | SD1 | R1 |
| Frederick Sigworth | Yale University | Basics of Image Processing: from the data you have to the structures you'd like | SD1 | 1 |
| Thomas Goddard | UC San Francisco | Visualizing proteasomes in tomograms with ChimeraX | SD1 | R1 |
| Wednesday, March 2, 2022 | ||||
| Steven Ludtke | Baylor College of Medicine | CryoET processing toward atomic resolution (EMAN2) | SD1 SD2 | R1, R2, R3 |
| Thursday, March 3, 2022 | ||||
| Dimitry Tegunov | Genentech | Using the WARP-RELION-M pipeline to obtain high-resolution structures from tilt series | SD1 | R1,R2,R3 |
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2021
SSRL/LCLS Users Meeting: CryoEM of Macromolecules and Cells Workshop
Virtual Workshop | September 21, 2021 | Agenda
| Speaker | Institution | Title | Slide Deck | Recording |
|---|---|---|---|---|
| Alfonso Mondragon | Northwestern University | Structural Studies of a type III-A CRISPR effector compleex | SD1 | - |
| Seyed Torabi | Yale University | Integration of biochemical and structural data to investigate stabilizing triplex-forming elements in RNA | SD1 | R1 |
| Kalli Kappel | MIT Broad Institute | Accelerating RNA structure determination with cryo-EM and DRRAFTER computational modeling | SD1 | R1 |
| Zhaoming Su | Sichuan University | Cryo-EM reveals multiple states in splicing reaction of Tetrahymena intron | SD1 | R1 |
| Kaiming Zhang | University of Science and Technology of China | Determination of small RNA-only 3D structures by Cryo-EM | SD1 | R1 |
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S2C2 CryoEM Map Modeling and Validation Workshop
Virtual Workshop | September 8-10, 2021 | Agenda
Workshop Materials: Computer Setup & Instructions; Q&A Day 1 Day 2 Day 3
|
Speaker
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Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Wednesday, September 8, 2021
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||||
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Christopher Schlicksup
|
Lawrence Berkeley National Laboratory
|
Phenix tools for improving maps, and building, refining, and validating models
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||
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Tom Goddard
|
UC San Francisco
|
Using AlphaFold predicted structures in ChimeraX for cryoEM modeling
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Grigore Pintilie
|
Stanford University
|
Model fitting and assessment in CryoEM maps with Segger, Segfit, and Q-scores
|
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Jasmine Young
Justin Flatt
|
Rutgers University
|
Deposition, Validation, and Biocuration at the wwPDB
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| Thursday, September 9, 2021 | ||||
| Paul Emsley | MRC Laboratory of Molecular Biology | Coot Tools for Cryo-EM Model-building, Refinement, Validation, and Analysis | SD1 | R1 |
| Tristan Croll | Cambridge University | Interactive physics-based model building with ISOLDE | SD1 | R1 |
|
Maximilian Edich Jola Mirecka |
Universität Hamburg STFC UKRI |
Secondary | SD1 | R1 |
| Grzegorz Chojnowski | EMBL, Hamburg | Macromolecular models automatically built into cryo-EM maps and how to use them | SD1 | R1 |
| Jane Richardson | Duke University | CryoEM model validation, to avoid or correct errors at various resolutions | SD1 | R1 |
| Friday, September 10, 2021 | ||||
| Tristan Cragnolini | Birbeck College | Improving and validating map/model fits with TEMPy | SD1 | R1 |
| Brinda Vallat | Rutgers University | Virtual Torsion Plots to Validate Coarse RNA Conformation | SD1 | R1 |
| Andriy Kryshtafovych | UC Davis | Model comparisons | SD1 | R1 |
| Ardan Patwardhan | EMBL-EBI | Cryo-EM validation from the perspective of the EMDB and EMPIAR archives | SD1 | R1 |
| Abhishek Singharoy | Arizona State University | Molecular dynamics flexible fitting extended: structures, ensembles and free energy of proteins and small molecules |
|
R1 |
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S2C2 CryoEM Specimen Preparation and Data Collection Workshop
Virtual Workshop | March 3-4, 2021 | Agenda
Workshop Materials: Understanding the invisible hands of sample preparation for cryo-EM", Unanswered Q&A from Prof. Peter's Lecture
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Speaker
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Institution
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Title
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Slide Deck
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Recording
|
|---|---|---|---|---|
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Wednesday, March 3, 2021
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Peter J. Peters
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(M4i) Maastricht University & CryoSol-World
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Understanding the invisible hands of sample preparation for cryo-EM
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Benjamin Bammes
|
Direct Electron, LP
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Optimizing Direct Detector Design for a Range of Cryo-EM Techniques
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Jeffrey Lengyel
|
Thermo Fisher
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The latest generation technology for Cryo-EM allowing for unparalleled scientific breakthroughs
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Thursday, March 4, 2021
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Christopher Russo
|
LMB, MRC, Cambridge UK
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Principles of information loss in cryoEM and how eliminating specimen movement can improve cryomicrographs
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R1,R2,R3 | |
|
Sahil Gulati
|
Ametek
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Advances in direct electron detection: getting the most out of your microscope
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Yee Ting Li
|
SLAC National Accelerator
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Data Management at S2C2
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Patrick Mitchell
|
SLAC National Accelerator
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S2C2 data collection
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All
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Final Q&A
|
- | |
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2020
CryoEM In-Residence Training and Public Lecture: Tomography and Volta Phase Plate
Virtual Workshop | December 10 - 11, 2020 | Agenda
S2C2 CryoEM CCP-EM Modeling Workshop
Virtual Workshop | November 10-13, 2020 | Agenda
Workshop Materials: computing instructions
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Speaker
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Institution
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Title
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Slide Deck
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Recording
|
|---|---|---|---|---|
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Tuesday, November 10, 2020
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Colin Palmer
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CCP-EM
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Lecture: Intro to workshop and CCP-EM
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Kevin Cowtan
|
University of York
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Lecture: Automated model building with Buccaneer & Nautilus
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Kevin Cowtan
|
University of York
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Tutorial: Buccaneer
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-
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Paul Emsley
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MRC, LMB
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Lecture: Cryo-EM model building with modern Coot
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Paul Emsley
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MRC, LMB
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Tutorial: Coot (part 1)
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-
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Wednesday, November 11, 2020
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Paul Emsley
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MRC, LMB
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Tutorial: Coot (part 2)
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-
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Maya Topf
|
ISMB, Birkbeck
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Lecture: Flexible fitting of Atomic Models
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Tristan Cragnolini
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ISMB, Birkbeck
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Tutorial: Flex-EM (part 1)
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-
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Aaron Sweeney
|
Univ. College London
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Tutorial: Flex-EM (part 2)
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-
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Andrea Thorn
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University of Würzburg
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Lecture: Finding secondary structure in cryo-EM maps: HARUSPEX
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Thursday, November 12, 2020
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Rob Nicholls
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MRC, LMB
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Lecture Refinement against cryo-EM Maps
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Rob Nicholls
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MRC, LMB
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Tutorial: Refmac (part 1)
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-
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Rob Nicholls
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MRC, LMB
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Tutorial: Refmac (part 2)
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-
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Ardan Patwardhan
|
EMBL-EBI
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Lecture: PDB, EMDB, & Empiar: Public archiving of cryo-EM data
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-
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Arjen Jakobi
|
TU Delft
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Lecture: Map sharpening tools for cryo-EM density maps
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Arjen Jakobi
|
TU Delft
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Tutorial: LocScale
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-
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Friday, November 13, 2020
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Agnel Joseph
|
CCP-EM
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Lecture: Validation of cryo-EM maps and models
|
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Agnel Joseph
|
CCP-EM
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Lecture: Model Validation
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-
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Agnel Joseph
|
CCP-EM
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Tutorial: Model Validation
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-
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All Speakers
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General Q&A Session
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-
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SSRL/LCLS Users' Meeting: Cryo-EM of COVID-related Macromolecules
Virtual Workshop | September 28, 2020 | Agenda
|
Speaker
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Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
David Veesler
|
University of Washington
|
Structural Studies of the SARS-CoV Spike Glycoprotein
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-
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David Stuart
|
Oxford University, Diamond Light Source
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The use of cryoEM structural information to advance SARS2-CoV-2 biology and therapy
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Goran Kokic
|
Max Planck Institute, Göttingen
|
Structure of replicating SARS-COV-2 polymerase
|
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Erica O. Saphire Adrian Enriquez
|
La Jolla Institute
|
Antibodies against emerging viral disease
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-
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Rhiju Das
Ivan Zheludev
|
Stanford University
|
CryoEM of previously unsolvable RNA structures including coronavirus genome elements
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Stephan Wilkens
|
SUNY Upstate Medical University
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Targeting Vacuolar H+-ATPase for Antiviral Therapy
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Fundamentals of Single Particle CryoEM Workshop
Virtual Workshop | August 11 - 12, 2020 | Agenda
|
Speaker
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Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Tuesday, August 11, 2020
|
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Mark Herzik
|
UC San Diego
|
Sample preparation for cryo-EM
|
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David DeRosier
|
Brandeis University
|
Image contrast theory and reconstruction
|
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Alexis Rohou
|
Genentech
|
Principles of image processing
|
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Andres Leschziner
|
UC San Diego
|
Determining structures of challenging samples
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Wednesday, August 12, 2020
|
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Dmitry Lyumkis
|
Salk Institute
|
Dealing with resolution anisotropyand considerations for high resolution structure determination
|
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Wah Chiu
|
Stanford/SLAC
|
Atomic modeling and the importance of validation
|
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|
Ali Punjani
|
Structural Biotechnology
|
CryoSPARC demonstration/tutorial (see June Workshop for slides)
|
-
|
|
S2C2 CryoEM Image Processing Workshop: cryoSPARC
Virtual Workshop | June 10 - 12, 2020 | Agenda
Workshop Materials: user interface overview, cryoSPARC instructions Day 1 / Day 2, Q&A Day 1, Day 2, Day 3
|
Speaker
|
Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Wednesday, June 10, 2020
|
||||
|
David DeRosier
|
Brandeis University
|
If only...
|
||
|
Ali Punjabi
|
Structural Biotechnology
|
CryoSPARC (AM) 06/10/20 User interface overview/Day 1 CryoSPARC Instructions
|
||
|
Ali Punjabi
|
Structural Biotechnology
|
CryoSPARC (PM) 06/10/20
|
||
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Thursday, June 11, 2020
|
||||
|
Ali Punjabi
|
Structural Biotechnology
|
CryoSPARC (AM) 06/11/20
|
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Ali Punjabi
|
Structural Biotechnology
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CryoSPARC (PM) 06/11/20
|
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Stephan Arulthasan
|
Structural Biotechnology
|
CryoSPARC architecture & management
|
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Ali Punjabi
|
Structural Biotechnology
|
CryoSPARC (PM) 06/11/20
|
-
|
|
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Friday, June 12, 2020
|
||||
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Greg Pintilie
|
Stanford University
|
CryoEM map resolution assessment, validation, visualization and segmentation
|
||
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Cathy Lawson
|
Rutgers University
|
EMDataResource: structure data archiving, validation challenges
|
||
Basics of Sample Preparations & Detection Technologies for Cryo-Electron Microscopy
Virtual Lecture | May 29, 2020
|
Speaker
|
Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Yifan Cheng
|
HHMI UC San Francisco
|
Basics of sample preparation
|
-
|
-
|
|
Christopher Booth
|
Amtek
|
Detection technologies for cryo-electron microscopy
|
General Principles of Phase Contrast and Phase Plates & Single-Particle Grid Preparation
Virtual Lectures | April 20, 2020
| Speaker | Institution | Title | Slide Deck | Recording |
|---|---|---|---|---|
| Glaeser, Robert | Lawrence Berkeley National Lab | General principles of phase contrast and pase plates | SD1 | R1 |
| Glaeser, Robert | Lawrence Berkeley National Lab | Single-particle grid preparation | SD1 | R1 |
Specimen Prep and Data Collection Workshop
In-Person Workshop | January 15 - 17, 2020 | Cancelled by COVID-19
S2C2 CryoEM Modeling Workshop: ChimeraX & Phenix
In-Person Workshop | January 15 - 17, 2020 | Agenda
|
Speaker
|
Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Wednesday, January 15, 2020
|
||||
|
Tom Goddard
Elaine Meng
Eric Pettersen
|
UC San Francisco
|
ChimeraX-Visualization of cryoEM maps and models
|
-
|
|
|
Greg Pintilie
|
Stanford University
|
Segmentation, rigid body and flexible fitting
|
-
|
|
|
Tom Goddard
Elaine Meng
Eric Pettersen
|
UC San Francisco
|
Refinement of cryoEM maps with Isolde
|
-
|
|
|
Tom Goddard
|
UC San Francisco
|
Publication-quality images and movies
|
-
|
|
|
Thursday, January 16, 2020
|
||||
|
Paul Adams
|
Lawrence Berkeley National Lab
|
Phenix introduction (LBNL videos are all included on this video)
|
||
|
Paul Adams
|
Lawrence Berkeley National Lab
|
Atomic models from cryo-EM data
|
-
|
|
|
Pavel Afonine
|
Lawrence Berkeley National Lab
|
Structure Refinement
|
-
|
|
|
Paul Adams
|
Lawrence Berkeley National Lab
|
Model validation for cryo-EM
|
-
|
|
|
Pavel Afonine
|
Lawrence Berkeley National Lab
|
Structure refinement and validation practical
|
-
|
|
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Nigel Moriarty
|
Lawrence Berkeley National Lab
|
Ligands
|
-
|
|
|
Friday, January 17, 2020
|
||||
|
Greg Pintilie
|
Stanford University
|
Assessment of high resolution cryoEM features
|
||
|
Helen Berman
|
Rutgers University
|
Validation of biological structures
|
-
|
-
|
|
Cathy Lawson
|
Rutgers University
|
EM structure archives, validation and challenges (included with Greg Pintilie's video)
|
-
|
|
2019
S2C2 CryoEM Image Processing Workshop: SCIPION
Workshop Material: agenda
| Speaker | Institution | Title | Slide Deck | Recording |
|---|---|---|---|---|
| Monday, November 18, 2019 | ||||
| David DeRosier | Brandeis University | General principles of cryoEM 3D reconstructions | SD1 | R1, R2, R3 |
| Jose Maria Carazo | CNB-CSIC | Basic image processing for EM | SD1, SD2 | R1, R2, R3 |
| Carlos Sanchez-Sorzano | CNB-CSIC | Image processing principles | SD1 | R1, R2, R3, R4, R5 |
| Tuesday, November 19, 2019 | ||||
| Yiorgio Skiniotis | Stanford University | Dealing with heterogeneity in single-particle data/examples | SD1 | - |
| Wednesday, November 20, 2019 | ||||
| Greg Pintilie | Stanford University | Model building and map validation | - | - |
S2C2 CryoEM Training for Beginners Workshop
Workshop Materials: agenda, Prof. Grant Jensen Videos)
| Speaker | Institution | Title | Slide Deck | Recording |
|---|---|---|---|---|
| Wednesday, September 11, 2019 | ||||
| Juergen Plitzko | Max Planck Institute | EM basics | SD1 | - |
| Yiorgio Skiniotis | Stanford University | Freezing basics | SD1 | - |
| Thursday, September 12, 2019 | ||||
| Christopher Booth | Gatan | Camera | SD1 | - |
| Yee Ting Li | SLAC National Accelerator Lab | eLogbook and data transfer | - | - |
| Robert Glaeser | Lawrence Berkeley National Lab | Radiation damage | SD1 | - |
| Friday, September 13, 2019 | ||||
| Zoltan Metlagel | FEI | EPU and phase plate | - | - |
| Corey Hecksel | Stanford University | Data collection (serial EM) | SD1 | - |
S2C2 CryoEM Modeling Workshop: ChimeraX & Phenix
Workshop Materials: agenda, properly weighted map t20s, model validation tutorial/model optimization tutorial
| Speaker | Institution | Title | Slide Deck | Recording |
|---|---|---|---|---|
| Wednesday, July 10, 2019 | ||||
|
Tom Goddard Elaine Meng
Eric Pettersen
|
UC San Francisco | ChimeraX - visualization of cryoEM maps and models | SD1 | - |
| Greg Pintilie | Stanford University | Rigid body and flexible fitting | SD1 | - |
| Thursday, July 11, 2019 | ||||
| Paul Adams | Lawrence Berkeley National Lab (LBNL) | Phenix introduction | SD1 | - |
| Paul Adams | LBNL | Automated model docking and building | SD1 | - |
| Pavel Afonine | LBNL | Phenix tools for cryoEM: refinement and validation | SD1 | - |
| Paul Adams | LBNL | Model validation for cryo-EM | SD1 | - |
| Nigel Moriarty | LBNL | Restraints in Phenix | SD1 | - |
| Friday, July 12, 2019 | ||||
| Corey Hyrc | Baylor College of Medicine | Accurate representaiton of cryoEM structures | SD1 | - |
| Greg Pintilie | Stanford University | Assessment of high resolution of cryoEM features | SD1 | - |
| Michael Robertson | Stanford University | CryoEM structure and ligand modeling | - | - |
| Cathy Lawson | Rutgers University | CryoEM archives, challenges and validation | SD1 | - |
S2C2 CryoEM Image Processing Workshop: SCIPION
In-Person Workshop | November 18 - 20, 2019 | Agenda
|
Speaker
|
Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Monday, March 11, 2019
|
||||
|
David DeRosier
|
Brandeis University
|
General principles of cryoEM image reconstruction
|
-
|
|
|
Yee Ting Li
|
SLAC National Accelerator Lab
|
Data acquisition and pre-processing software logging on and computer basics
|
-
|
|
|
Cornelius Gati
|
SLAC
|
Image processing with Relion - introduction
|
-
|
-
|
|
Tuesday, March 12, 2019
|
||||
|
Cornelius Gati
|
SLAC
|
Practical 2 & 3
|
-
|
-
|
|
Wednesday, March 13, 2019
|
||||
|
Greg Pintilie / Wah Chiu
|
Stanford University
|
Map visualization and validation
|
_
|
|
|
Cathy Lawson
|
Rutgers University
|
Cryo-EM map challenge, map deposition and archiving
|
-
|
|
|
Yiorgio Skiniotis
|
Stanford University
|
Dealing with heterogeneity in single-particle cryoEM data
|
-
|
|
|
Cornelius Gati
|
SLAC
|
Different image processing software packages
|
-
|
-
|
S2C2 CryoEM Training for Beginners Workshop
In-Person Workshop | September 11 - 13, 2019 | Agenda (no recordings for this workshop)
|
Speaker
|
Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Wednesday, September 11, 2019
|
||||
|
Juergen Plitzko
|
Max Planck Institute
|
EM Basics
|
SD1
|
_
|
|
Yiorgo Skiniotis
|
Stanford
|
Freezing Basics
|
SD1
|
-
|
|
Hands On
|
Practical |
Corey Hecksel, Megan Mayer, Zoltan Metlagel, Nancy Rizzo
|
SD1
|
-
|
|
Thursday, September 12, 2019
|
||||
|
Chris Booth
|
Gatan |
Camera
|
SD1
|
-
|
|
Yee-Ting Li
|
SLAC
|
eLogbook and data transfer |
SD1
|
-
|
|
Robert Glaeser
|
Lawrence Berkeley National Lab |
Radiation Damage
|
SD1
|
-
|
|
Hands On
|
Practical
|
Corey Hecksel, Megan Mayer, Zoltan Metlagel, Nancy Rizzo
|
SD1
|
- |
|
Friday, September, 13, 2019
|
||||
|
Zoltan Metlagel
|
Thermofisher
|
EPU and Phase Plate
|
SD1
|
-
|
|
Corey Hecksel
|
SLAC
|
Data Collection (Serial EM)
|
SD1
|
-
|
|
Hands On
|
Practical
|
Corey Hecksel, Megan Mayer, Zoltan Metlagel, Nancy Rizzo
|
SD1
|
-
|
S2C2 Modeling Workshop: ChimeraX & Phenix
In-Person Workshop | July 10 - 12, 2019 | Agenda (no recordings)
|
Speaker
|
Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Wednesday, July 10, 2019
|
||||
|
Tom Ferrin/ Tom Goddard
|
UCSF
|
ChimeraX - Visualization of CryoEM maps and Models
|
SD1
|
-
|
|
Greg Pintilie
|
Stanford
|
Rigid Body and Flexible Fitting
|
SD1 |
-
|
|
Michael Schmid
|
SLAC
|
Hands on VR to Visualize CryoEM Structures
|
SD1
|
-
|
|
Thursday, July 11, 2019
|
||||
|
Paul Adams
|
Lawrence Berkeley Lab
|
Phenix Intro/Automated Model Docking and Building
|
SD1
|
-
|
|
Pavel Afonine
|
Lawrence Berkeley Lab
|
Structure Refinement
|
SD1
|
-
|
|
Dorothee Liebschner
|
Lawrence Berkeley Lab
|
Validation and Refinement
|
SD1
|
-
|
|
Paul Adams
|
Lawrence Berkeley Lab
|
Intro to Phenix Cryo-EM Tools Practical/Automated Model Building
|
SD1
|
-
|
|
Pavel Afonine
|
Lawrence Berkeley Lab
|
Structure Refinement Practical
|
SD1
|
-
|
|
Dorothee Liebschner
|
Lawrence Berkeley Lab
|
Validation and Refinement Practical
|
SD1
|
- |
|
Friday, July 12, 2019
|
||||
|
Corey Hryc
|
Accurate Representation of CryoEM Structures
|
SD1
|
-
|
|
|
Greg Pintilie
|
Stanford
|
Assessment of High Resolution CryoEM Features
|
SD1
|
-
|
|
Mike Robertson
|
Stanford
|
CryoEM Structure Ligand Modeling
|
SD1
|
-
|
|
Cathy Lawson
|
Rutgers
|
CryoEM Structural Validation
|
SD1
|
-
|
|
|
|
Practical with Apoferritin or other Molecules
|
SD1
|
-
|
S2C2 Cryo-EM Image Processing Workshop
|
Speaker
|
Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Monday, March 11, 2019
|
||||
|
David DeRosier
|
Brandeis University
|
General Principles of CryoEM Image Reconstruction
|
SD1 |
-
|
|
Yee-Ting Li
|
SLAC
|
Data Acquistion and pre-processing software, logging on and computer basics
|
SD1 |
-
|
|
Cornelius Gati
|
SLAC
|
Image Processing with Relion Intro/Practical 1: Images, MotionCor, CTF
|
SD1
|
-
|
|
Tuesday, March 12, 2019
|
||||
|
Cornelius Gati
|
SLAC
|
Practical 2: 2D/3D Classification/Practical 3: 3D Refinement & Map Improvement
|
SD1
|
-
|
|
Wednesday, March 13, 2019
|
||||
|
Greg Pintilie/Wah Chiu
|
SLAC
|
Map Visualization and Validation
|
SD1
|
-
|
| Cathy Lawson | Rutgers |
Map Challenge and Map Deposition and Archival
|
SD1 |
-
|
|
Georgios Skiniotis
|
Stanford
|
Dealing with Heterogeneity in single-particle cryoEM data
|
SD1
|
-
|
|
Kaiming Zhang
|
Stanford
|
Image Processing of Heterogeneous Particle Images
|
SD1
|
-
|
|
Bart Buijsse
|
ThermoFisher
|
Update on Volta Phase Plate
|
SD1
|
-
|
S2C2 Cryo-EM Training for Beginners Workshop
|
Speaker
|
Institution
|
Title
|
Slide Deck
|
Recording
|
|---|---|---|---|---|
|
Tuesday, January 22, 2019
|
||||
|
Yiorgio Skiniotis
|
Stanford University
|
Cryo-specimen preparation
|
-
|
|
|
Wah Chiu
|
Stanford/SLAC
|
Radiation damage in cryoEM
|
-
|
|
|
Christopher Booth
|
Gatan
|
Detection technologies for cryo-electron microscopy
|
-
|
|
|
Wednesday, January 23, 2019
|
||||
|
Juergen Plitzko
|
Max Planck Institute
|
TEM basics and column alignment
|
-
|
|
|
David Bushnell
|
Stanford/SLAC
|
Low dose imaging via serial EM and EPU
|
-
|
|
|
Wah Chiu
|
Stanford/SLAC
|
Image contrast theory in CryoEM
|
-
|
|
|
Thursday, January 24, 2019
|
||||
|
John Spear
|
Thermofisher
|
Krios and Talos alignment
|
-
|
|
|
Yee Ting Li
|
SLAC
|
eLogbook, data collection monitoring and
pre-processing
|
-
|
|
Last Updated
Mon, 10/24/2022 - 15:19
